COI data from: Invasive species detection along coastal harbours in northern region of Vastra Gotaland 2024

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Descrição

Environmental DNA sequence data of invasive species along the harbors in the northern regions of Vastra Gotaland. Sequence data was obtained from both water samples, and plankton samples of two sampling events, one in the summer and one in the autumn of 2024. The amplicons were amplified by COI Leray-XT primers: Wangensteen et al. 2018 and annotated against an inhouse database of invasive and non-indigenous species of Norway, Sweden and EEA created with EchoPipe: Stensrud et al. in press. The data was created for Länsstyrelsen Vastra Gotaland and financed through HaV.This dataset was published via the SBDI ASV portal.

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Os dados deste recurso de ocorrência foram publicados como um Darwin Core Archive (DwC-A), que é o formato padronizado para compartilhamento de dados de biodiversidade como um conjunto de uma ou mais tabelas de dados. A tabela de dados do núcleo contém 22.015 registros.

Também existem 1 tabelas de dados de extensão. Um registro de extensão fornece informações adicionais sobre um registro do núcleo. O número de registros em cada tabela de dados de extensão é ilustrado abaixo.

22015

This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.

Versões

A tabela abaixo mostra apenas versões de recursos que são publicamente acessíveis.

Como citar

Pesquisadores deveriam citar esta obra da seguinte maneira:

Stensrud E (2026). COI data from: Invasive species detection along coastal harbours in northern region of Vastra Gotaland 2024. Version 1.2. eDNA solutions. Occurrence dataset. https://www.gbif.se/ipt/resource?r=lstvg-hamnar_nord-2024-coi&v=1.2

Direitos

Pesquisadores devem respeitar a seguinte declaração de direitos:

O editor e o detentor dos direitos deste trabalho é eDNA solutions. This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

GBIF Registration

Este recurso foi registrado no GBIF e atribuído ao seguinte GBIF UUID: 5de24e82-7d28-45e7-bc17-c8b8aad88961. eDNA solutions publica este recurso, e está registrado no GBIF como um publicador de dados aprovado por GBIF Sweden.

Palavras-chave

Occurrence; eDNA; metabarocing; invasive species; alien species; NIS; Observation

Contatos

Eivind Stensrud

Provedor Dos Metadados ●
Originador ●
Ponto De Contato

eDNA solutions AB

MEDICINAREGATAN 9E, Floor 4

413 90 GÖTEBORG

Västra Götaland

eivind@ednasolutions.se

https://ednasolutions.se/

Alexander Eiler

Ponto De Contato

eDNA solutions AB

413 90 GÖTEBORG

Västra Götaland

alex@ednasolutions.se

https://orcid.org/0000-0001-9916-9567

Johan Andersson

Ponto De Contato

WaterCircle AB

416 64 Göteborg

Västra Götaland

Cobertura Geográfica

Water and plankton samples were collected from larger harbors in the northwest region of Västra Götaland during the summer and autumn of 2024.

Coordenadas delimitadoras	Sul Oeste [58,275, 11,164], Norte Leste [58,943, 11,458]

Cobertura Taxonômica

N/A

Reino	Chromista, Animalia, Plantae, Unassigned
Filo	Arthropoda, Nemertea, Myzozoa, Ctenophora, Gastrotricha, Oomycota, Echinodermata, Mollusca, Platyhelminthes, Bryozoa, Rotifera, Annelida, Chordata, Rhodophyta, Hemichordata, Porifera, Tardigrada, Nematoda, Chaetognatha, Cnidaria
Class	Dinophyceae, Palaeonemertea, Clitellata, Polychaeta, Aves, Sagittoidea, Ascidiacea, Gastrotricha_X, Maxillopoda, Gastropoda, Demospongiae, Bangiophyceae, Eurotatoria, Pilidiophora, Enteropneusta, Arthropoda_X, Insecta, Gymnolaemata, Elasmobranchii, Copepoda, Echinoidea, Scyphozoa, Ophiuroidea, Malacostraca, Holothuroidea, Hydrozoa, Florideophyceae, Hoplonemertea, Chordata_X, Arachnida, Bivalvia, Mammalia, Phylactolaemata, Collembola, Anthozoa, Turbellaria, Peronosporea, Heterotardigrada, Tentaculata, Cephalopoda, Branchiopoda, Asteroidea
Ordem	Symphypleona, Clionaida, Limnomedusae, Amphipoda, Calanoida, Polychaeta_X, Gastropoda_X, Echiniscoidea, Monostilifera, Valvatida, Cheilostomatida, Primates, Pilidiophora_X, Crassiclitellata, Plumatellida, Bdelloidea, Euphausiacea, Araneae, Gastrotricha_XX, Diptera, Suberitida, Entomobryomorpha, Mytilida, Squaliformes, Enteropneusta_X, Ostreida, Neogastropoda, Prorocentrales, Galeommatida, Phyllodocida, Forcipulatida, Venerida, Spongillida, Littorinimorpha, Eunicida, Actiniaria, Alcyonacea, Malacostraca_X, Aphragmophora, Paxillosida, Saprolegniales, Diplostraca, Pennatulacea, Leptothecata, Clupeiformes, Scyphozoa_X, Camarodonta, Dinophysiales, Nudibranchia, Heteronemertea, Decapoda, Hildenbrandiales, Gonyaulacales, Gadiformes, Harpacticoida, Phlebobranchia, Dendrochirotida, Passeriformes, Sepiida, Bangiales, Florideophyceae_X, Ceramiales, Turbellaria_X, Salmoniformes, Stolidobranchia, Spatangoida, Anthoathecata, Sabellida, Colaconematales, Lobata, Tubificida, Semaeostomeae, Nemaliales, Ophiuroidea_X, Ploima, Cephalaspidea, Perciformes, Archinemertea, Poecilosclerida, Suessiales, Acrochaetiales, Charadriiformes, Sessilia, Arthropoda_XX, Dinophyceae_X, Kentrogonida, Peronosporales, Cyclopoida, Amphilepidida, Pleuronectiformes

Cobertura Temporal

Data Inicial / Data final	2024-07-10 / 2024-09-14

Dados Sobre o Projeto

Nenhuma descrição disponível

Título	Invasive species detection along coastal harbours in northern region of Vastra Gotaland 2024
Financiamento	Länsstyrelsen Västra Götaland and HaV.
Descrição da Área de Estudo	Harbors along the west coast of Västra Götaland in Sweden.

O pessoal envolvido no projeto:

Eivind Stensrud

Autor

https://orcid.org/0009-0008-9515-186X

Métodos de Amostragem

Plankton samples were collected using an Apstein 50 plankton net with 100 μm mesh size (Hydro-Bios, Germany), by lowering the net 1-2 meters above the bottom and retrieving it at ~1 meter per second. This was done 2-3 times per sampling site until enough plankton material had been collected. The collected material was then transferred to a plankton sieve with a mesh size of 90 μm and cleaned with local seawater before being transferred to a 15 ml sterile Falcon tube. To preserve the samples, the Falcon tube was filled with 99% ethanol and stored in the refrigerator until DNA extraction. The water samples were collected using a Ruttner collector (1.7 L) where water masses from two sites were pooled. For each site, water was collected from ~1-2 meters above the bottom and surface water and mixed in a bucket that was previously sterilized with 10% chlorine, washed with ethanol and rinsed three times with local seawater before each sampling. New gloves and a new sterile 60 ml syringe were used at each site to filter between 1140 and 1800 ml of water through a PureFlo disk filter (GF/PES 5.0/0.8 μm, Saint-Gobain Filter, USA) to capture environmental DNA. The filters were then immediately frozen in a Dry Shipper cooled with liquid nitrogen (-196°C) and then stored at -20°C when returned to the laboratory until DNA extraction.

Área de Estudo	Water and plankton samples were collected at suspected hotspots of introduction of invasive and NIS along the coast of Västra Götaland Sweden of 2024.

Descrição dos passos do método:

Will be published after publication of report.

Metadados Adicionais

Acknowledgements
Introduction
Propósito
Identificadores alternativos	5de24e82-7d28-45e7-bc17-c8b8aad88961
	https://www.gbif.se/ipt/resource?r=lstvg-hamnar_nord-2024-coi