Description
This project reports genetic data from the non-indigenous species (NIS) monitoring program in Sweden in 2024, as commissioned by the Swedish Agency for Marine and Water Management, SwAM. The data were collected and submitted by Seanalytics, www.seanalytics.se in collaboration with University of Gothenburg. Sampling locations were situated in ports and marinas along the Swedish coast, including the Bothnian gulf, the Swedish West coast and Southern coast. Three types of samples (water samples, plankton samples, hard bottom samples) were collected during two seasons - late spring and late summer. Species were identified using COI metabarcoding. The dataset includes ASVs (amplicon sequence variants) and their associated metadata. Field protocols are documented in Sundberg et al (2024) DNA-baserad övervakning av arter i akvatisk miljö - verifiering och tillämpning. Naturvårdsverket rapport. pp 44. Rapport 7157. ISBN 978-91-620-7157-8 and Sundberg et al (2022) Genetic methods in environmental monitoring: Early detection and monitoring of non-indigenous species based on DNA. Report to the Swedish Agency for Marine and Water Management 2022:4. ISBN: 978-91-89329-32-4.
This dataset was published via the SBDI ASV portal.
Enregistrements de données
Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 102 723 enregistrements.
1 tableurs de données d'extension existent également. Un enregistrement d'extension fournit des informations supplémentaires sur un enregistrement du cœur de standard (core). Le nombre d'enregistrements dans chaque tableur de données d'extension est illustré ci-dessous.
Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.
Versions
Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.
Comment citer
Les chercheurs doivent citer cette ressource comme suit:
Obst M (2025). National monitoring program for non-indigenous species (NIS), Sweden 2024. Version 1.1. University of Gothenburg. Occurrence dataset. https://www.gbif.se/ipt/resource?r=nis_monitor_2024&v=1.1
Droits
Les chercheurs doivent respecter la déclaration de droits suivante:
L’éditeur et détenteur des droits de cette ressource est University of Gothenburg. En vertu de la loi, l'éditeur a abandonné ses droits par rapport à ces données et les a dédié au Domaine Public (CC0 1.0). Les utilisateurs peuvent copier, modifier, distribuer et utiliser ces travaux, incluant des utilisations commerciales, sans aucune restriction.
Enregistrement GBIF
Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 56d92b6b-308b-45a4-93d4-a41406c91de6. University of Gothenburg publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du GBIF Sweden.
Mots-clé
Occurrence; Observation; non-indigenous species; alien species; invasive species; metabarcoding; COI; eDNA; Autonomous Reef Monitoring Structures (ARMS); early warning; range shift
Contacts
- Créateur ●
- Personne De Contact
- +46766183827
https://orcid.org/0000-0003-0264-9631
Couverture géographique
Samples were collected along the Swedish coast, including the Bothnian gulf, the Swedish West coast and Southern east coast.
| Enveloppe géographique | Sud Ouest [55,425, 11,702], Nord Est [62,492, 19,07] |
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Couverture taxonomique
Pas de description disponible
| Kingdom | Chromista, Animalia, Plantae, Unassigned |
|---|---|
| Phylum | Arthropoda, Nemertea, Ctenophora, Gastrotricha, Oomycota, Echinodermata, Mollusca, Platyhelminthes, Bryozoa, Rotifera, Annelida, Chordata, Rhodophyta, Xenacoelomorpha, Porifera, Nematoda, Chaetognatha, Phoronida, Cnidaria |
| Class | Clitellata, Polychaeta, Aves, Sagittoidea, Ascidiacea, Diplopoda, Gastrotricha_X, Maxillopoda, Gastropoda, Demospongiae, Bangiophyceae, Eurotatoria, Pilidiophora, Arthropoda_X, Insecta, Gymnolaemata, Copepoda, Echinoidea, Scyphozoa, Ophiuroidea, Malacostraca, Hydrozoa, Florideophyceae, Hoplonemertea, Chordata_X, Arachnida, Bivalvia, Leptocardii, Mammalia, Phylactolaemata, Collembola, Anthozoa, Turbellaria, Peronosporea, Chromadorea, Xenacoelomorpha_X, Staurozoa, Phoronida_X, Tentaculata, Branchiopoda, Asteroidea |
Couverture temporelle
| Date de début / Date de fin | 2024-05-25 / 2024-09-28 |
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Méthodes d'échantillonnage
All sampling was carried out by Seanalytics. Plankton was collected with a Hydro-Bios Apstein 90µm net, diameter 40 cm opening. Samples were pulled from the bottom upwards, two pulls per site. The samples were collected in a 1-litre jar and fixed with 96% ethanol in an amount that ensured that the final concentration did not fall below 70%. A total of three samples were collected per site. Water samples were taken with Ruttner water sampler, 1 liter at the surface and 1 liter at a depth of 3-6 meters at each location. These samples were combined in a 2-liter disposable container and stored in cool bags with ice packs until filtration. A total of 10 samples from each location were collected. Water samples were filtered (Sterivex 0.45µl) immediately with a peristaltic pump connected to an electric drill and fixed with 95% ethanol and sealed with stoppers. Between rooms, 10% chlorine solution was pumped through and then rinsed thoroughly. This was also done before the blank sample (0.5 liters of deionized water) for contamination control. All samples were stored in a -20° C freezer until extraction.
| Etendue de l'étude | Samples were collected long the Swedish west coast, in ports and marinas during early summer and autumn 2024 |
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| Contrôle qualité | Quality control was performed following the handbook and the Molecular Standard Operation Procedures (MSOP) published by ARMS-MBON (https://data.arms-mbon.org). |
Description des étapes de la méthode:
- All sample locations were revisited and hence samples 2x during the year. Analytical protocols followed the steps described by Daraghmeh et al (2025) A Long- Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS-MBON 2018–2020. Molecular Ecology Resources, 2025; 0:e14073, https://doi.org/10.1111/1755-0998.14073.
Métadonnées additionnelles
| Remerciements | The data collection was funded by the Swedish Agency for Marine and Water Management (SwAM) as well as Länsstyrelsen Västra Götaland (Lst VGR). |
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| Objet | Samples of water (eDNA), plankton and settlement plates were taken in ports and marinas along the Swedish coastline during early summer and autumn 2024. A total of 249 samples were taken (including blanks and positive controls), leading to identification of 494 species based on 4264 amplicon sequence variants (ASVs). Scanning for non-indigenous species (NIS) resulted in 873 observations of 33 known and putative NIS as well as 10 crytogenic species. Raw genetic sequence data are submitted to ENA. |
| Identifiants alternatifs | 56d92b6b-308b-45a4-93d4-a41406c91de6 |
| https://www.gbif.se/ipt/resource?r=nis_monitor_2024 |