Descrição
This project reports genetic data from the non-indigenous species (NIS) monitoring program in Sweden in 2024, as commissioned by the Swedish Agency for Marine and Water Management, SwAM. The data were collected and submitted by Seanalytics, www.seanalytics.se in collaboration with University of Gothenburg. Sampling locations were situated in ports and marinas along the Swedish coast, including the Bothnian gulf, the Swedish West coast and Southern coast. Three types of samples (water samples, plankton samples, hard bottom samples) were collected during two seasons - late spring and late summer. Species were identified using COI metabarcoding. The dataset includes ASVs (amplicon sequence variants) and their associated metadata. Field protocols are documented in Sundberg et al (2024) DNA-baserad övervakning av arter i akvatisk miljö - verifiering och tillämpning. Naturvårdsverket rapport. pp 44. Rapport 7157. ISBN 978-91-620-7157-8 and Sundberg et al (2022) Genetic methods in environmental monitoring: Early detection and monitoring of non-indigenous species based on DNA. Report to the Swedish Agency for Marine and Water Management 2022:4. ISBN: 978-91-89329-32-4.
This dataset was published via the SBDI ASV portal.
Registros de Dados
Os dados deste recurso de ocorrência foram publicados como um Darwin Core Archive (DwC-A), que é o formato padronizado para compartilhamento de dados de biodiversidade como um conjunto de uma ou mais tabelas de dados. A tabela de dados do núcleo contém 102.723 registros.
Também existem 1 tabelas de dados de extensão. Um registro de extensão fornece informações adicionais sobre um registro do núcleo. O número de registros em cada tabela de dados de extensão é ilustrado abaixo.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versões
A tabela abaixo mostra apenas versões de recursos que são publicamente acessíveis.
Como citar
Pesquisadores deveriam citar esta obra da seguinte maneira:
Obst M (2025). National monitoring program for non-indigenous species (NIS), Sweden 2024. Version 1.1. University of Gothenburg. Occurrence dataset. https://www.gbif.se/ipt/resource?r=nis_monitor_2024&v=1.1
Direitos
Pesquisadores devem respeitar a seguinte declaração de direitos:
O editor e o detentor dos direitos deste trabalho é University of Gothenburg. To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF Registration
Este recurso foi registrado no GBIF e atribuído ao seguinte GBIF UUID: 56d92b6b-308b-45a4-93d4-a41406c91de6. University of Gothenburg publica este recurso, e está registrado no GBIF como um publicador de dados aprovado por GBIF Sweden.
Palavras-chave
Occurrence; Observation; non-indigenous species; alien species; invasive species; metabarcoding; COI; eDNA; Autonomous Reef Monitoring Structures (ARMS); early warning; range shift
Contatos
- Originador ●
- Ponto De Contato
- +46766183827
https://orcid.org/0000-0003-0264-9631
Cobertura Geográfica
Samples were collected along the Swedish coast, including the Bothnian gulf, the Swedish West coast and Southern east coast.
| Coordenadas delimitadoras | Sul Oeste [55,425, 11,702], Norte Leste [62,492, 19,07] |
|---|
Cobertura Taxonômica
Nenhuma descrição disponível
| Reino | Chromista, Animalia, Plantae, Unassigned |
|---|---|
| Filo | Arthropoda, Nemertea, Ctenophora, Gastrotricha, Oomycota, Echinodermata, Mollusca, Platyhelminthes, Bryozoa, Rotifera, Annelida, Chordata, Rhodophyta, Xenacoelomorpha, Porifera, Nematoda, Chaetognatha, Phoronida, Cnidaria |
| Class | Clitellata, Polychaeta, Aves, Sagittoidea, Ascidiacea, Diplopoda, Gastrotricha_X, Maxillopoda, Gastropoda, Demospongiae, Bangiophyceae, Eurotatoria, Pilidiophora, Arthropoda_X, Insecta, Gymnolaemata, Copepoda, Echinoidea, Scyphozoa, Ophiuroidea, Malacostraca, Hydrozoa, Florideophyceae, Hoplonemertea, Chordata_X, Arachnida, Bivalvia, Leptocardii, Mammalia, Phylactolaemata, Collembola, Anthozoa, Turbellaria, Peronosporea, Chromadorea, Xenacoelomorpha_X, Staurozoa, Phoronida_X, Tentaculata, Branchiopoda, Asteroidea |
Cobertura Temporal
| Data Inicial / Data final | 2024-05-25 / 2024-09-28 |
|---|
Métodos de Amostragem
All sampling was carried out by Seanalytics. Plankton was collected with a Hydro-Bios Apstein 90µm net, diameter 40 cm opening. Samples were pulled from the bottom upwards, two pulls per site. The samples were collected in a 1-litre jar and fixed with 96% ethanol in an amount that ensured that the final concentration did not fall below 70%. A total of three samples were collected per site. Water samples were taken with Ruttner water sampler, 1 liter at the surface and 1 liter at a depth of 3-6 meters at each location. These samples were combined in a 2-liter disposable container and stored in cool bags with ice packs until filtration. A total of 10 samples from each location were collected. Water samples were filtered (Sterivex 0.45µl) immediately with a peristaltic pump connected to an electric drill and fixed with 95% ethanol and sealed with stoppers. Between rooms, 10% chlorine solution was pumped through and then rinsed thoroughly. This was also done before the blank sample (0.5 liters of deionized water) for contamination control. All samples were stored in a -20° C freezer until extraction.
| Área de Estudo | Samples were collected long the Swedish west coast, in ports and marinas during early summer and autumn 2024 |
|---|---|
| Controle de Qualidade | Quality control was performed following the handbook and the Molecular Standard Operation Procedures (MSOP) published by ARMS-MBON (https://data.arms-mbon.org). |
Descrição dos passos do método:
- All sample locations were revisited and hence samples 2x during the year. Analytical protocols followed the steps described by Daraghmeh et al (2025) A Long- Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS-MBON 2018–2020. Molecular Ecology Resources, 2025; 0:e14073, https://doi.org/10.1111/1755-0998.14073.
Metadados Adicionais
| Acknowledgements | The data collection was funded by the Swedish Agency for Marine and Water Management (SwAM) as well as Länsstyrelsen Västra Götaland (Lst VGR). |
|---|---|
| Propósito | Samples of water (eDNA), plankton and settlement plates were taken in ports and marinas along the Swedish coastline during early summer and autumn 2024. A total of 249 samples were taken (including blanks and positive controls), leading to identification of 494 species based on 4264 amplicon sequence variants (ASVs). Scanning for non-indigenous species (NIS) resulted in 873 observations of 33 known and putative NIS as well as 10 crytogenic species. Raw genetic sequence data are submitted to ENA. |
| Identificadores alternativos | 56d92b6b-308b-45a4-93d4-a41406c91de6 |
| https://www.gbif.se/ipt/resource?r=nis_monitor_2024 |