Описание
This project reports genetic data from the non-indigenous species (NIS) monitoring program in Sweden in 2024, as commissioned by the Swedish Agency for Marine and Water Management, SwAM. The data were collected and submitted by Seanalytics, www.seanalytics.se in collaboration with University of Gothenburg. Sampling locations were situated in ports and marinas along the Swedish coast, including the Bothnian gulf, the Swedish West coast and Southern coast. Three types of samples (water samples, plankton samples, hard bottom samples) were collected during two seasons - late spring and late summer. Species were identified using COI metabarcoding. The dataset includes ASVs (amplicon sequence variants) and their associated metadata. Field protocols are documented in Sundberg et al (2024) DNA-baserad övervakning av arter i akvatisk miljö - verifiering och tillämpning. Naturvårdsverket rapport. pp 44. Rapport 7157. ISBN 978-91-620-7157-8 and Sundberg et al (2022) Genetic methods in environmental monitoring: Early detection and monitoring of non-indigenous species based on DNA. Report to the Swedish Agency for Marine and Water Management 2022:4. ISBN: 978-91-89329-32-4.
This dataset was published via the SBDI ASV portal.
Записи данных
Данные этого occurrence ресурса были опубликованы в виде Darwin Core Archive (DwC-A), который является стандартным форматом для обмена данными о биоразнообразии в виде набора из одной или нескольких таблиц. Основная таблица данных содержит 102 723 записей.
Также в наличии 1 таблиц с данными расширений. Записи расширений содержат дополнительную информацию об основной записи. Число записей в каждой таблице данных расширения показано ниже.
Данный экземпляр IPT архивирует данные и таким образом служит хранилищем данных. Данные и метаданные ресурсов доступны для скачивания в разделе Загрузки. В таблице версий перечислены другие версии ресурса, которые были доступны публично, что позволяет отслеживать изменения, внесенные в ресурс с течением времени.
Версии
В таблице ниже указаны только опубликованные версии ресурса, которые доступны для свободного скачивания.
Как оформить ссылку
Исследователи должны дать ссылку на эту работу следующим образом:
Obst M (2025). National monitoring program for non-indigenous species (NIS), Sweden 2024. Version 1.1. University of Gothenburg. Occurrence dataset. https://www.gbif.se/ipt/resource?r=nis_monitor_2024&v=1.1
Права
Исследователи должны соблюдать следующие права:
Публикующей организацией и владельцем прав на данную работу является University of Gothenburg. Насколько это возможно по закону, издатель отказался от всех прав на эти данные и посвятил их Public Domain (CC0 1.0). Пользователи могут без ограничений копировать, изменять, распространять и использовать работу, в том числе в коммерческих целях.
Регистрация в GBIF
Этот ресурс был зарегистрирован в GBIF, ему был присвоен следующий UUID: 56d92b6b-308b-45a4-93d4-a41406c91de6. University of Gothenburg отвечает за публикацию этого ресурса, и зарегистрирован в GBIF как издатель данных при оподдержке GBIF Sweden.
Ключевые слова
Occurrence; Observation; non-indigenous species; alien species; invasive species; metabarcoding; COI; eDNA; Autonomous Reef Monitoring Structures (ARMS); early warning; range shift
Контакты
- Originator ●
- Point Of Contact
- +46766183827
https://orcid.org/0000-0003-0264-9631
Географический охват
Samples were collected along the Swedish coast, including the Bothnian gulf, the Swedish West coast and Southern east coast.
| Ограничивающие координаты | Юг Запад [55,425, 11,702], Север Восток [62,492, 19,07] |
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Таксономический охват
Описание отсутсвует
| Kingdom | Chromista, Animalia, Plantae, Unassigned |
|---|---|
| Phylum | Arthropoda, Nemertea, Ctenophora, Gastrotricha, Oomycota, Echinodermata, Mollusca, Platyhelminthes, Bryozoa, Rotifera, Annelida, Chordata, Rhodophyta, Xenacoelomorpha, Porifera, Nematoda, Chaetognatha, Phoronida, Cnidaria |
| Class | Clitellata, Polychaeta, Aves, Sagittoidea, Ascidiacea, Diplopoda, Gastrotricha_X, Maxillopoda, Gastropoda, Demospongiae, Bangiophyceae, Eurotatoria, Pilidiophora, Arthropoda_X, Insecta, Gymnolaemata, Copepoda, Echinoidea, Scyphozoa, Ophiuroidea, Malacostraca, Hydrozoa, Florideophyceae, Hoplonemertea, Chordata_X, Arachnida, Bivalvia, Leptocardii, Mammalia, Phylactolaemata, Collembola, Anthozoa, Turbellaria, Peronosporea, Chromadorea, Xenacoelomorpha_X, Staurozoa, Phoronida_X, Tentaculata, Branchiopoda, Asteroidea |
Временной охват
| Дата начала / Дата окончания | 2024-05-25 / 2024-09-28 |
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Методы сбора
All sampling was carried out by Seanalytics. Plankton was collected with a Hydro-Bios Apstein 90µm net, diameter 40 cm opening. Samples were pulled from the bottom upwards, two pulls per site. The samples were collected in a 1-litre jar and fixed with 96% ethanol in an amount that ensured that the final concentration did not fall below 70%. A total of three samples were collected per site. Water samples were taken with Ruttner water sampler, 1 liter at the surface and 1 liter at a depth of 3-6 meters at each location. These samples were combined in a 2-liter disposable container and stored in cool bags with ice packs until filtration. A total of 10 samples from each location were collected. Water samples were filtered (Sterivex 0.45µl) immediately with a peristaltic pump connected to an electric drill and fixed with 95% ethanol and sealed with stoppers. Between rooms, 10% chlorine solution was pumped through and then rinsed thoroughly. This was also done before the blank sample (0.5 liters of deionized water) for contamination control. All samples were stored in a -20° C freezer until extraction.
| Охват исследования | Samples were collected long the Swedish west coast, in ports and marinas during early summer and autumn 2024 |
|---|---|
| Контроль качества | Quality control was performed following the handbook and the Molecular Standard Operation Procedures (MSOP) published by ARMS-MBON (https://data.arms-mbon.org). |
Описание этапа методики:
- All sample locations were revisited and hence samples 2x during the year. Analytical protocols followed the steps described by Daraghmeh et al (2025) A Long- Term Ecological Research Data Set From the Marine Genetic Monitoring Program ARMS-MBON 2018–2020. Molecular Ecology Resources, 2025; 0:e14073, https://doi.org/10.1111/1755-0998.14073.
Дополнительные метаданные
| Благодарности | The data collection was funded by the Swedish Agency for Marine and Water Management (SwAM) as well as Länsstyrelsen Västra Götaland (Lst VGR). |
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| Цель | Samples of water (eDNA), plankton and settlement plates were taken in ports and marinas along the Swedish coastline during early summer and autumn 2024. A total of 249 samples were taken (including blanks and positive controls), leading to identification of 494 species based on 4264 amplicon sequence variants (ASVs). Scanning for non-indigenous species (NIS) resulted in 873 observations of 33 known and putative NIS as well as 10 crytogenic species. Raw genetic sequence data are submitted to ENA. |
| Альтернативные идентификаторы | 56d92b6b-308b-45a4-93d4-a41406c91de6 |
| https://www.gbif.se/ipt/resource?r=nis_monitor_2024 |