Descrição
Project Overview
The project aims to investigate species diversity and variety from a citizen science perspective (more of a random character, i.e., not a strictly scientific research character).
Project Goals
- Investigate species diversity and variety on a larger scale (>1,000 samples)
- Give sequences a "face" = metadata such as environmental data, field images, etc.
- Provide tools for species identification
- Use DNA barcoding of the ITS region
- Be cost-effective
- Be methodologically feasible from fruiting body to analyzed sequence
- Disseminate knowledge about the method
Dataset Description
The dataset contains DNA-barcoded samples of fungal fruiting bodies collected in Sweden. The collection has been mostly random and the selection has primarily been based on the collector's own interest. Collectors are mainly amateur mycologists. Barcoding has been performed on the ITS region and parts of the SSU and LSU regions. Additional observational metadata such as coordinates, images, and environmental descriptions are linked to the Swedish Observation System for each respective sample.This dataset was published via the SBDI ASV portal.
Registros de Dados
Os dados deste recurso de ocorrência foram publicados como um Darwin Core Archive (DwC-A), que é o formato padronizado para compartilhamento de dados de biodiversidade como um conjunto de uma ou mais tabelas de dados. A tabela de dados do núcleo contém 316 registros.
Também existem 2 tabelas de dados de extensão. Um registro de extensão fornece informações adicionais sobre um registro do núcleo. O número de registros em cada tabela de dados de extensão é ilustrado abaixo.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versões
A tabela abaixo mostra apenas versões de recursos que são publicamente acessíveis.
Como citar
Pesquisadores deveriam citar esta obra da seguinte maneira:
Fritzson P, Bråvander B (2025). Fungal Diversity Survey Sweden ITS-LSU rDNA. Version 1.1. Biology Section, Uppsala University. Occurrence dataset. https://www.gbif.se/ipt/resource?r=fdss_its-lsu&v=1.1
Direitos
Pesquisadores devem respeitar a seguinte declaração de direitos:
O editor e o detentor dos direitos deste trabalho é Biology Section, Uppsala University. To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF Registration
Este recurso foi registrado no GBIF e atribuído ao seguinte GBIF UUID: 7510f2e6-ebd2-414e-b91d-7e9c8b673655. Biology Section, Uppsala University publica este recurso, e está registrado no GBIF como um publicador de dados aprovado por GBIF Sweden.
Palavras-chave
Occurrence; Observation
Contatos
- Originador ●
- Ponto De Contato
- Originador ●
- Ponto De Contato
- Ponto De Contato
- Associate Professor
- Evolutionsbiologiskt centrum, Norbyvägen 18D
- +46184716444
Cobertura Geográfica
Sweden
| Coordenadas delimitadoras | Sul Oeste [57,843, 14,819], Norte Leste [67,956, 23,25] |
|---|
Cobertura Taxonômica
All fungi samples identified to genus or species
| Reino | Fungi |
|---|---|
| Filo | Ascomycota, Basidiomycota |
| Class | Eurotiomycetes, Geoglossomycetes, Agaricomycetes, Pezizomycetes |
| Ordem | Pezizales, Polyporales, Eurotiales, Hymenochaetales, Russulales, Thelephorales, Geoglossales, Boletales, Agaricales, Cantharellales, Gomphales |
| Família | Rhizopogonaceae, Tricholomataceae, Russulaceae, Auriscalpiaceae, Entolomataceae, Pluteaceae, Gomphaceae, Lycoperdaceae, Suillaceae, Hydnaceae, Mycenaceae, Physalacriaceae, Amanitaceae, Strophariaceae, Geoglossaceae, Psathyrellaceae, Steccherinaceae, Polyporaceae, Bankeraceae, Elaphomycetaceae, Omphalotaceae, Stereaceae, Clavariaceae, Pyronemataceae, Cortinariaceae, Inocybaceae, Schizoporaceae, Hymenogastraceae, Agaricales_fam_Incertae_sedis, Fomitopsidaceae, Bolbitiaceae, Pterulaceae, Lyophyllaceae, Hygrophoraceae |
Cobertura Temporal
| Data Inicial / Data final | 2023-04-03 / 2024-02-01 |
|---|
Dados Sobre o Projeto
Nenhuma descrição disponível
| Título | Fungal Diversity Survey Sweden |
|---|
O pessoal envolvido no projeto:
- Originador
- Originador
Métodos de Amostragem
The collection of fruiting bodies has been conducted randomly based on the collector's own interest and knowledge. Both known and unknown species to the collector have been gathered. All fruiting bodies have been dried using a mushroom dryer at a maximum of 35 degrees Celsius and then stored dry and dark in paper envelopes or zip bags. Subsequent handling is described in detail in protocol: https://www.protocols.io/view/uppsala-fungal-barcoding-using-ont-dna-extraction-n2bvj3mbblk5/v1
| Área de Estudo | Collection of fungi, mainly basidiomycetes, within Sweden and primarily in the Uppland province. |
|---|
Descrição dos passos do método:
- Step 1: From collection of fruitbodies to a barcoded sequence https://www.protocols.io/view/uppsala-fungal-barcoding-using-ont-dna-extraction-n2bvj3mbblk5/v1 Step 2: Bioinformatics. Raw reads to consensus sequencies https://github.com/Rosling-lab/ont_barcoding Step 3: Consensus sequencies analysis and database reporting Comming article xxxxx Databases: Swedish Speicies Observation System (Artportalen), GenBank, ENA, ASV
Metadados Adicionais
| Acknowledgements | Uppsala University/Evolutionary Biology Centre (EBC) Anna Rosling, Brendan Furneaux, Sara Mehrabi, Ioana Onut Brännström, David Manyara , Karl Soler Kinnerbäck Swedish University of Agricultural Sciences (SLU)/Artdatabanken Elisabet Ottosson Umeå University/NBIS, Jeanette Tångrot |
|---|---|
| Identificadores alternativos | 7510f2e6-ebd2-414e-b91d-7e9c8b673655 |
| https://www.gbif.se/ipt/resource?r=fdss_its-lsu |